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    <title>Second Thought</title>
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    <id>tag:secondthought.org,2008-10-26:/blog//1</id>
    <updated>2008-12-26T14:56:46Z</updated>
    
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<entry>
    <title>Strange Attractors and Perception</title>
    <link rel="alternate" type="text/html" href="http://secondthought.org/blog/2008/12/strange-attractors-and-perception.html" />
    <id>tag:secondthought.org,2008:/blog//1.6</id>

    <published>2008-12-26T14:54:21Z</published>
    <updated>2008-12-26T14:56:46Z</updated>

    <summary>In my last post, I ended by suggesting that Many systems in the world display truly chaotic behavior, wherein small changes to the initial conditions creating vast differences in the outcomes. On the other hand, many have very stable attractors...</summary>
    <author>
        <name>Andrew Hogue</name>
        
    </author>
    
        <category term="Musings" scheme="http://www.sixapart.com/ns/types#category" />
    
    <category term="attractors" label="attractors" scheme="http://www.sixapart.com/ns/types#tag" />
    <category term="chaos" label="chaos" scheme="http://www.sixapart.com/ns/types#tag" />
    <category term="perception" label="perception" scheme="http://www.sixapart.com/ns/types#tag" />
    
    <content type="html" xml:lang="en" xml:base="http://secondthought.org/blog/">
        <![CDATA[<p>In
my <a href="http://secondthought.org/blog/2008/12/strange-attractors-on-my-walk-to-work.html">last
post</a>, I ended by suggesting that
  <blockquote>
    Many systems in the world display truly chaotic behavior, wherein
    small changes to the initial conditions creating vast differences
    in the outcomes.  On the other hand, many have very stable
    attractors like those described above, where one can discard most
    of the external factors affecting them in favor of a much smaller
    number that have the largest effects on the outcome.
  </blockquote>

<p>Weather is the canonical example of a chaotic system.  atmospheric
  systems are extremely unpredictable, with their behaivior varying
  greatly depending on small variations of initial conditions.
  Moreover, weather systems are so immense, and consist of so many
  component variables, that even if we <em>could</em> accurately
  simulate them, collecting the right initial conditions to kick off
  our simulation would be infeasible as well.

<p>Even so, there are features of weather systems that do make them
  somewhat tractable - we can recognize and predict the behavior of
  things like storm fronts, high pressure systems, hurricanes, and jet
  streams.  These behave in relatively stable ways for short periods
  of time, allowing us to make predictions (though over long enough
  periods of time, the collective weight of small errors in initial
  conditions build up and render our models useless).

<p>Similar things may be said about other complicated systems.  While
  it is impossible to perfectly predict the behavior of the
  U.S. electorate during a national election, with enough samples,
  sites
  like <a href="http://fivethirtyeight.com">FiveThirtyEight.com</a>
  came within an astonishingly small margin of the final tally in the
  2008 presidential election.  Again, this result was possible because
  the electorate behaves in a relatively stable way for a short period
  of time, even if we cannot measure its initial state 100%
  accurately.

<p>We can even say the same sort of thing about things like the
  observable world around us.  For instance, on my walk to work, I see
  an incredibly complex world around me, with cars, people, animals,
  buildings, rain and snow, and thousands of other events happening
  all the time.  If I were to freeze-frame a single moment of my walk,
  and observe the multitude of objects around me, there are millions
  of possible "next steps" that might happen.  That car on the street
  might swerve violently to the left and hit a parking meter.  That
  woman in front of me might start spinning in circles in the middle
  of the sidewalk.  The lights might change color at random times,
  without warning.

<p>But none of those things are <em>likely</em> to happen.  In fact,
  if you showed that snapshot of my walk to a dozen people, and asked
  them what the same scene would look like three seconds hence, they'd
  probably unanimously agreee on the major features of the scene.
  Cars will continue to drive down the road in a predictable way,
  people will continue to walk straight down the street, lost in their
  thoughts, and lights will change on a regular timetable.  The dozen
  people might disagree on the details, like what color the next car
  that comes down the street might be, but the major components would
  be the same.

<p>So, the world evolves in a chaotic way where the details are
  difficult to predict, but the major features tend to evolve in a
  stable and continuous way when observed at a certain scale of time
  and
  space.  <a href="http://en.wikipedia.org/wiki/Attractor#Strange_attractor">Sound
  familiar?</a>  These relatively stable features are <em>strange
  attractors</em> in the complex system of the world.  For nearby sets
  of initial conditions, events in the world fall into a the same
  basin of attraction.  A car driving down the street will most likely
  continue to drive down the street, regardless of whether it is one
  inch to the right or left.  A person walking will continue to put
  one foot in front of the other, regardless of whether they step on a
  crack in the sidewalk or not.

<p>This continuity and predictability on a certain scale is a major
  feature of the world around us, and one that I believe is intimately
  related to the way our brains perceive the world.  If the world
  really were chaotic, in the sense that outcomes were extremely
  sensitive to variation in initial conditions, we wouldn't be able to
  make any sense of it.  Unless we had extraordinarily sensitive
  perceptions, each time we perceived something we would miss subtle
  details in the initial conditions, and the outcome would be so
  different that we'd never be able to understand the world.

<p>But this isn't the case.  There are millions of <em>possible</em>
  places that a car that I perceive could be three seconds from now,
  but my brain can predict with high probability that it won't be on
  the sidewalk, so I continue walking.  Similarly, despite subtle
  variations in lighting, angle, and distance, I can consistently
  recognize a friend's face each time I see him.  The details are
  different each time, but the overall impression - "That's my friend"
  - is the same to my mind.

<p>Our brains are wired in such a way as to mimic these basins of
  attraction in the world.  We do, actually, perceive many subtle
  variations in our environment, things like lighting, angle,
  distance, temperature, and smell.  To make sense of the world, we
  look beyond the chaos, and see only the patterns.]]>
        
    </content>
</entry>

<entry>
    <title>Strange Attractors on My Walk to Work</title>
    <link rel="alternate" type="text/html" href="http://secondthought.org/blog/2008/12/strange-attractors-on-my-walk-to-work.html" />
    <id>tag:secondthought.org,2008:/blog//1.5</id>

    <published>2008-12-15T02:46:35Z</published>
    <updated>2008-12-18T02:31:54Z</updated>

    <summary> As I discussed last time, seemingly discrete events in the macroscopic world (like my possible walks to work) seem to &quot;collapse&quot; themselves into fewer possible outcomes based on intervening events. A large set of initial states result in a...</summary>
    <author>
        <name>Andrew Hogue</name>
        
    </author>
    
        <category term="Musings" scheme="http://www.sixapart.com/ns/types#category" />
    
    <category term="chaos" label="chaos" scheme="http://www.sixapart.com/ns/types#tag" />
    <category term="physics" label="physics" scheme="http://www.sixapart.com/ns/types#tag" />
    
    <content type="html" xml:lang="en" xml:base="http://secondthought.org/blog/">
        <![CDATA[

<p>As I
  discussed <a href="http://secondthought.org/blog/2008/11/walking-to-work.html">last
  time</a>, seemingly discrete events in the macroscopic world (like
  my possible walks to work) seem to "collapse" themselves into fewer
  possible outcomes based on intervening events.  A large set of
  initial states result in a single end state, and overall, the total
  number of initial states gets winnowed down into a much smaller
  number of final states.

<p>Additionally, at many (if not most) points along the spectrum of
  starting states, a little variation one way or another doesn't mean
  much for the outcome - the system is resilient to small changes.
  However, there <em>are</em> certain points ("inflection" or <a href="http://en.wikipedia.org/wiki/File:Lorenz_attractor_yb.svg"><img style="padding:5px" align="right" src="/images/lorenz_attractor_thumb.png" /></a>
  "tipping" points, one might say), where the outcome changes
  drastically based on a small change in initial conditions.

<p>All of this might sound familiar if you've read much
  about <a href="http://en.wikipedia.org/wiki/Chaos_theory">chaos
  theory</a>
  and <a href="http://en.wikipedia.org/wiki/Attractor#Strange_attractor">strange
  attractors</a>.  Consider that my walk to work is
  a <a href="http://en.wikipedia.org/wiki/Dynamical_system">dynamical
  system</a>, evolving over time based on a set of constraints, the
  most significant of which are the red lights.  The possible arrival
  scenarios are attractors - the system tends to evolve towards those
  points from a large set of initial conditions
  (the <a href="http://en.wikipedia.org/wiki/Basin_of_attraction">basin
  of attraction</a>).

<p>Note that there are thousands, if not millions, of other events
  along my walk to work that affect the timing of my walk to work.
  This is what makes the system chaotic, and the attractors strange.
  The sequence of my steps, whether I'm tired or well-rested, the
  other people walking around me, the prevailing winds, and many other
  variables affect my speed and my arrival time.  However, the red
  lights have, by far, the most significant effect on my arrival time.
  That's why I was able to draw the diagrams I did in the previous
  post to show how the red lights affect my arrival times at work.

<p>In fact, my exact arrival time may vary by fractions of a second
  one way or another because of these other, more minor effects.  But
  in analyzing my arrival at work, those miliseconds don't matter<a href="http://www.reinhardkargl.com/iBlog/"><img style="padding:5px" align="left" src="/images/lorenz_attractor_3d_thumb.png" /></a>
  nearly as much as the multi-second (or even multi-minute) swings
  caused by the red lights.

<p>(Similarly, one might say that in analyzing my entire day, the
  difference between arriving at work one minute earlier or later
  doesn't mean very much, unless, for example, I miss breakfast.
  Further, one might say that in analyzing my career, my arrival at
  work on one day doesn't have much effect, unless, for example, I
  miss an important meeting and get fired as a result.  This points to
  another interesting bit, which is that a similar analysis of the
  attractors in a system is valid at many different <em>scales</em>,
  but that's a whole other blog post...)

<p>Many systems in the world display truly chaotic behavior, wherein
  small changes to the initial conditions creating vast differences in
  the outcomes.  On the other hand, many have very stable attractors
  like those described above, where one can discard most of the
  external factors affecting them in favor of a much smaller number
  that have the largest effects on the outcome.  

<p>Next time: rampant speculation on how these attractors relate to
  how we perceive the world...]]>
        
    </content>
</entry>

<entry>
    <title>Walking to work</title>
    <link rel="alternate" type="text/html" href="http://secondthought.org/blog/2008/11/walking-to-work.html" />
    <id>tag:secondthought.org,2008:/blog//1.4</id>

    <published>2008-11-23T16:45:10Z</published>
    <updated>2008-12-15T02:45:48Z</updated>

    <summary>My commute to and from work each day consists of a train and subway ride, as well as about 1/2 a mile of walking. This time is when I get most of my reading, writing, and thinking done. Unsurprisingly, given...</summary>
    <author>
        <name>Andrew Hogue</name>
        
    </author>
    
        <category term="Musings" scheme="http://www.sixapart.com/ns/types#category" />
    
    <category term="physics" label="physics" scheme="http://www.sixapart.com/ns/types#tag" />
    <category term="space" label="space" scheme="http://www.sixapart.com/ns/types#tag" />
    <category term="time" label="time" scheme="http://www.sixapart.com/ns/types#tag" />
    
    <content type="html" xml:lang="en" xml:base="http://secondthought.org/blog/">
        <![CDATA[<p>My commute to and from work each day consists of a train and subway
  ride, as well as about 1/2 a mile of walking.  This time is when I
  get most of my reading, writing, and thinking done.  Unsurprisingly,
  given how much time I spend missing trains and held up walking at
  red lights, my thoughts often turn to the walk or ride itself.

<p>Let's consider one part of my commute: the walk from the PATH
  station to the office.  This walk is about 5 blocks or so on the New
  York grid, passing through a traffic light at each intersection.
  Plotted with one dimension of space and one of time, it might look
  like this:

<p><img src="/images/walk-to-work-blank.png">

<p>In this plot, time progresses from left to right, and my walk will
  take me from the top of the plot (the train station) to the bottom
  (the office).  Each red light along the way is indicated as a red
  line (green lights are left blank for clarity - they would fill the
  blank spaces between each red dash).  

<p>Let's say I leave the train station at a particular time near the
  left side of the graph and start walking:

<p><img src="/images/walk-to-work-one-route.png">

<p>Assuming I walk at a constant speed, my path while walking looks
  like a diagonal line through time and space.  When I get held up at
  a red light, my path goes horizontal (I'm standing still in space,
  but still progressing through time).  Overall, this gives my path a
  bit of a zig-zag pattern in the 1-D space + time plot.

<p>Now, on the same morning, let's say I leave the PATH station minute
  or two later (maybe the train was delayed a bit, or I exited from the
  back of the train instead of the front):

<p><img src="/images/walk-to-work-another-route.png">

<p>Once again, my zig-zag path takes me to the office, stopping at the
  red lights along the way.  But interestingly, despite leaving later
  from the train station, <em>I arrive at the office at exactly the
  same time</em>:

<p><img src="/images/walk-to-work-both-routes.png">

<p>In both routes, despite stopping at different lights early on my
  journey, I still get caught at that same last red light.  It didn't
  matter that I started earlier or later - <em>the outcome was the
  same</em>.

<p>Now, we plot all of the possible starting times and their resulting
  walks:

<p><img src="/images/walk-to-work-all-routes.png">

<p>Interestingly, despite dozens of possible starting times at the
  train station, there are only a few possible times of arrival at the
  office.  In effect, the red lights "collapse" the outcomes into a
  smaller set.  For example, the 18 different starting times
  highlighted in the figure below all have the same result:

<p><img src="/images/walk-to-work-all-routes-highlighted.png">

<p>Another interesting set of paths to look at are the "tipping
  points" - any pair of neighboring paths with different arrival
  times:

<p><img src="/images/walk-to-work-all-routes-tipping.png">

<p>Here, a difference of a few seconds in starting time between the
  blue and yellow paths means many minutes of delay on the arrival
  side.  Also notable is that the blue path is one of the shortest,
  with respect to total time, whereas the gold path is one of the
  longest.

<p>Next time: how I think these paths relate
to <a href="http://en.wikipedia.org/wiki/Chaos_theory">chaos
theory</a>
and <a href="http://en.wikipedia.org/wiki/Strange_attractors">strange
attractors</a>...

<p>(Inspired by
  Ybry's <a href="http://books.google.com/books?id=BNo6lG9Q5KEC&pg=PA206&lpg=PA206&dq=tufte+train+schedule+visualization&source=web&ots=ZAlKabxtB0&sig=_VjTYuRfHeL-FT04iyF9IG3Lg2s&hl=en&sa=X&oi=book_result&resnum=2&ct=result">visualizations
  of train schedules</a>, from Edward Tufte's
  book <a href="http://books.google.com/books?id=MmJqAAAAMAAJ&q=envisioning+information&dq=envisioning+information&ei=hYcpSYjiOYHwMrCr_bsH&pgis=1">Envisioning Information</a>.)]]>
        
    </content>
</entry>

<entry>
    <title>Book: Einstein&apos;s Dreams</title>
    <link rel="alternate" type="text/html" href="http://secondthought.org/blog/2008/11/book-einsteins-dreams.html" />
    <id>tag:secondthought.org,2008:/blog//1.2</id>

    <published>2008-11-16T01:56:24Z</published>
    <updated>2008-11-23T17:01:12Z</updated>

    <summary> 1905, known as Albert Einstein&apos;s &quot;annus mirablis,&quot; saw him produce some of the most inspired work in the history of natural philosophy. From the outside, it is easy to see the import of this work - in a single...</summary>
    <author>
        <name>Andrew Hogue</name>
        
    </author>
    
        <category term="Books" scheme="http://www.sixapart.com/ns/types#category" />
    
    <category term="books" label="books" scheme="http://www.sixapart.com/ns/types#tag" />
    <category term="einstein" label="einstein" scheme="http://www.sixapart.com/ns/types#tag" />
    <category term="physics" label="physics" scheme="http://www.sixapart.com/ns/types#tag" />
    
    <content type="html" xml:lang="en" xml:base="http://secondthought.org/blog/">
        <![CDATA[<img style="padding-left:5px" align="right" src="/images/einsteins_dreams.jpg" />

<p>1905, known as Albert Einstein's "annus mirablis," saw him produce
some of the most inspired work in the history of natural philosophy.
From the outside, it is easy to see the import of this work - in a
single year, Einstein established whole new fields of study, including
fundamental discoveries in quantum physics and the special theory of
relativity.

<p>But what was it like on the *inside*?  What was it like to *be* Albert
during that year, the Swiss patent clerk discerning the true nature of
the universe in his spare time?  What is the essence of scientific
discovery, of seeing so deeply into fundamental truths, of "Eureka!"?

</p><p>Alan Lightman's beautiful novel <a href="http://www.amazon.com/Einsteins-Dreams-Alan-Lightman/dp/140007780X/ref=pd_bbs_sr_1?ie=UTF8&amp;s=books&amp;qid=1226800873&amp;sr=8-1">Einstein's Dreams</a> brings us inside
the thoughts of this most famous of scientists through a series of
meditations on the nature of time.  Imagine time as a stream,
"occasionally displaced by a bit of debris, a passing breeze," or time
flowing backwards, or a single place where time stands still.  Imagine
a world where time flows more slowly for those at higher altitudes,
where everyone lives in the mountains on houses built on stilts.

</p><p>In "a world in which people live just one day... [where] a man or
a woman sees only one sunrise, one sunset."  December babies live a
cold life, while June babies only know warm.  Those born at night tend
to be insular, not venturing outdoors even when daylight finally
breaks, while those born during the day become depressed in the
literal twilight of their lives.

</p><p>Written in short chapters with brief sentences like brushstrokes on a
painting, <em>Einstein's Dreams</em> is an exercise in "What if?" - much like
scientific thought itself.  Each chapter takes as its premise some new
truth about time, using it as the basis for a meditation on love,
loss, relationships, life, and death.  In the world without memory,
lovers find that every night is the first night of passion.  At the
point where time stands still, mothers refuse to let go of their
children, staying where "the beautiful young daughter with blue eyes
and blonde hair will never stop smiling the smile she smiles now, will
never lose this soft pink glow on her cheeks... will never think
thoghts that her parents don't know, will never know evil."

</p><p>But beyond the meditations on time, I found the interludes, describing
Einstein in the Zurich of 1905, to be even more fascinating.  Here is
Einstein walking slowly down Speichergasse with his friend Besso; here
is Einstein absentmindedly staring off into space during dinner; here
is Einstein sitting in a fishing boat, looking for shapes in the
clouds.  

</p><p>I've been fascinated by biographies and portraits of great scientists
since I first read <a href="http://www.amazon.com/Genius-Life-Science-Richard-Feynman/dp/0679747044/ref=sr_1_2?ie=UTF8&amp;s=books&amp;qid=1226801091&amp;sr=1-2">Genius</a>, James Glieck's fabulous portrait of
Richard Feynman.  What is it that makes these great thinkers tick?
Why do they see deeper or farther into the truth of the universe than
the rest of humanity?  How do they discern this truth, and how do they
manage to convey it to the rest of us?  <em>Einstein's Dreams</em> is another
fantastic portrait of a great thinker in his prime, seeing what noone
else has seen.</p>]]>
        
    </content>
</entry>

<entry>
    <title>First Post!</title>
    <link rel="alternate" type="text/html" href="http://secondthought.org/blog/2008/11/is-this-thing-on.html" />
    <id>tag:secondthought.org,2008:/blog//1.3</id>

    <published>2008-11-16T01:13:04Z</published>
    <updated>2008-11-16T02:37:43Z</updated>

    <summary>I figure an endeavor like this deserves some sort of introduction to get things started. A bit of a &quot;Who, What, Why...&quot; sort of thing. First, the who - you can read more about me here. What? I tend to...</summary>
    <author>
        <name>Andrew Hogue</name>
        
    </author>
    
    
    <content type="html" xml:lang="en" xml:base="http://secondthought.org/blog/">
        <![CDATA[<p>I figure an endeavor like this deserves some sort of introduction to
get things started.  A bit of a "Who, What, Why..." sort of thing.

</p><p>First, the who - you can read more <a href="http://www.secondthought.org/about.html">about me here</a>.

</p><p>What?  I tend to be interested in physics, biology, neuroscience,
artificial intelligence, computer science, scientific histories and
biographies, science fiction, and hell, pretty much any book that <a href="http://www.screenplays-online.de/screenplay/32">blows your hair
back</a>.  Incidentally, the title of the site itself is a play on
words regarding the possibility of man creating another intelligence
in the world.

</p><p>As to why, mostly, this blog is a way for me to get my thoughts down -
to work through things I've been reading, thinking, and taking notes
about for many years now.  I expect it to be a bit scattershot, but I
also think that's going to be half the fun.</p>]]>
        
    </content>
</entry>

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